noinst_LIBRARIES = libseqlib.a

libseqlib_a_CPPFLAGS =  -I../htslib -Wno-sign-compare

libseqlib_a_SOURCES =   FastqReader.cpp BFC.cpp ReadFilter.cpp SeqPlot.cpp ssw_cpp.cpp ssw.c \
			GenomicRegion.cpp RefGenome.cpp BamWriter.cpp BamReader.cpp \
			BWAWrapper.cpp BamRecord.cpp FermiAssembler.cpp BamHeader.cpp jsoncpp.cpp
